Wolverine was in EMH?...I watched them all and don't recall that...to be fair, I have a horrific memory...
your right, not EMH, it was in Wolverine and the X-Men toon. Episode 7
In a sequel to the Hulk Vs, Nick Fury asks Wolverine a "favor" to once again fight against the Hulk in exchange for keeping the X-Men's real identities and the reality behind the Xavier school secret. However, Wolverine finds that there is more than Fury is letting on when Wolverine and the Hulk encounter the real monster terrorizing the Canadian Rockies and attacking the S.H.I.E.L.D. Agents dispatched there: the Wendigo. Wolverine keeps the Wendigo monsters busy while Banner searches for the cure. At the end, Wolverine gets revenge on Fury by awakening the Hulk claiming "Hulk wanted to thank you too." This is a homage to Wolverine's first appearance in The Incredible Hulk #181.